Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs73239718 chr7:127757768 C/T 1.25E-13 134 45.1 36.23 17.1 KM Plot
TGCT rs73239720 chr7:127762922 T/C 1.24E-13 134 43.68 37.1 17.1 KM Plot
TGCT rs73282126 chr14:70986041 T/C 1.3E-5 134 38.2 66.9 21.43 KM Plot
TGCT rs73282127 chr14:70986413 T/C 1.3E-5 134 38.2 66.9 21.43 KM Plot
TGCT rs73299530 chr20:58144099 C/T 1.73E-13 133 42.18 34.95 17.1 KM Plot
TGCT rs73299546 chr20:58146735 G/A 1.34E-13 134 42.27 34.95 17.1 KM Plot
TGCT rs7336683 chr13:106464318 C/T 1.38E-5 134 41.27 62.67 109.55 KM Plot
TGCT rs733682 chr16:27799517 C/G 0.000168 128 46.53 37.3 17.87 KM Plot
TGCT rs733683 chr16:27799740 C/T 0.000168 128 46.53 37.3 17.87 KM Plot
TGCT rs73375535 chr6:15202745 G/A 0.000133 130 37.42 45.93 NA KM Plot
TGCT rs73375542 chr6:15204010 G/C 0.000133 130 37.42 45.93 NA KM Plot
TGCT rs73375558 chr6:15213579 T/G 0.000123 131 37.53 45.93 NA KM Plot
TGCT rs73375561 chr6:15215975 C/T 0.000123 131 37.53 45.93 NA KM Plot
TGCT rs73375565 chr6:15216470 A/C 7.25E-5 131 37.62 45.1 NA KM Plot
TGCT rs73417293 chr6:41342880 A/G 1.36E-6 129 42.18 25.77 11.53 KM Plot